Welcome to the team Flowers!
Look, he does prefer the pocket, no doubt. Just saying he can run if needed and looks natural doing it.
To deal with the OP's point. I would say what guys like Kaepernick and Russell Wilson have shown, is that being a pocket passer is no longer the only way to win.
You can have a QB who can and will run the football, and have a very dynamic offense.
That doesn't mean you can't win just as well as always with a pocket passer.
Right now. SF, Seattle and Washington (with a healthy RG) have better offenses than ours.
The only thing that hurt Kaepernick and SF last night was his inexperience. Other than that, he was lights out.